EpiphanyGraph

Small .NET tool for turning an Obsidian note subtree into an MSAGL layout. It still works as a CLI, and now it can also sit on stdio as an MCP server.

What It Does

• scans markdown notes under a vault folder
• resolves Obsidian wikilinks and regular markdown note links
• optionally starts from an entry note and keeps only reachable notes
• classifies notes into source-tree and control-flow graph families
• lays out each family as its own graph partition
• reports cross-links that still jump between those families
• runs Microsoft Automatic Graph Layout
• writes:
  • manifest.json
  • source-tree.svg
  • source-tree.msagl.svg
  • source-tree.rich.svg
  • source-tree.json
  • control-flow.svg
  • control-flow.msagl.svg
  • control-flow.rich.svg
  • control-flow.json
  • cross-links.json
  • warnings.txt

CLI Usage

Run from source:

dotnet run --project . -- `
  --vault-root "E:\Projects\Aetheria-Economy\Aetheria\Source Tree Map" `
  --entry-note "Source Tree Map" `
  --renderer rich `
  --output-dir ".\out\source-tree-map"

After packing as a .NET tool:

epiphanygraph `
  --vault-root "E:\Projects\Aetheria-Economy\Aetheria\Source Tree Map" `
  --entry-note "Source Tree Map" `
  --renderer rich `
  --output-dir ".\out\source-tree-map"

MCP Usage

The MCP server exposes one tool:

• generate_obsidian_graph_layout

Run From Source

Use this in an MCP client config when you want to launch the server straight from the repo:

{
  "mcpServers": {
    "epiphanygraph": {
      "command": "dotnet",
      "args": [
        "run",
        "--project",
        "E:\\Projects\\EpiphanyGraph\\EpiphanyGraph.csproj",
        "--",
        "--mcp"
      ]
    }
  }
}

Pack As A .NET Tool

Build the package:

dotnet pack . -c Release -o .\nupkg

Install it from the local package output:

dotnet tool install --global --add-source .\nupkg EpiphanyGraph

Then point your MCP client at the installed command:

{
  "mcpServers": {
    "epiphanygraph": {
      "command": "epiphanygraph",
      "args": ["--mcp"]
    }
  }
}

MCP Tool Arguments

• vaultRoot: path to the Obsidian vault folder
• entryNote: optional entry note name or relative note path
• outputDir: optional output directory, defaults to ./out
• layout: sugiyama or mds
• renderer: msagl or rich
• includeUnreachable: keep notes that are not reachable from the entry note

MCP Tool Result

The tool writes manifest.json, primary partition SVGs, raw .msagl.svg variants, custom .rich.svg variants, partition JSON files, cross-links.json, and warnings.txt, then returns:

• output paths for each partition
• seed note IDs used for traversal
• total note and edge counts
• per-partition node and edge counts
• warnings
• the resolved entry note ID, if one was used

Graph Families

By default, notes whose basename contains Control Flow land in the control-flow partition, and everything else lands in source-tree.

You can override that with frontmatter on a note:

---
epiphany-graph-family: control-flow
---

or:

---
epiphany-graph-families:
  - source-tree
  - control-flow
---

Supported keys:

• epiphany-graph-family
• epiphany-graph-families
• graph-family
• graph-families

If your chosen entryNote is itself one of the explicit family roots, the generator also seeds traversal from any sibling family roots it can find.

• Source Tree Map will also pull in Control Flow Map
• Control Flow Map will also pull in Source Tree Map

That keeps structurally separated note graphs from vanishing just because they no longer link to each other directly.

Layout Modes

• sugiyama: layered, better for hierarchy-heavy note trees
• mds: force-ish spread, better when the graph is cross-linked chaos

mds is the closest MSAGL-native approximation to the Obsidian or Kamada-Kawai vibe. It is not a named Kamada-Kawai mode.

Renderer Modes

• msagl: the stock MSAGL SVG, useful as the plain baseline
• rich: a custom SVG renderer that consumes MSAGL graph geometry and semantic metadata, then draws something with more visual hierarchy and less beige despair

Notes

• unresolved and ambiguous links are written to warnings.txt
• node IDs in the partition .json files are relative note paths without .md
• the current implementation estimates label sizes instead of using a platform text measurer, because this is a generator, not a cathedral
• source-tree.svg and control-flow.svg are the primary outputs for the selected renderer
• raw MSAGL output is always preserved as *.msagl.svg
• the custom renderer currently emits *.rich.svg from MSAGL geometry, not from post-processing the stock SVG